5JQ0 Lyase date May 04, 2016
title Crystal Structure Of Human Carbonic Anhydrase II In Complex Benzoxaborole At Ph=8.7
authors V.Alterio, D.Esposito, A.Di Fiore, G.De Simone
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Petm13
symmetry Space Group: P 1 21 1
R_factor 0.105 R_Free 0.146
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.350 41.190 72.030 90.00 104.40 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand 6M4, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBenzoxaborole as a new chemotype for carbonic anhydrase inhibition., Alterio V, Cadoni R, Esposito D, Vullo D, Fiore AD, Monti SM, Caporale A, Ruvo M, Sechi M, Dumy P, Supuran CT, Simone G, Winum JY, Chem Commun (Camb). 2016 Sep 29;52(80):11983-11986. PMID:27722534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (5jq0.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 5JQ0
  • CSU: Contacts of Structural Units for 5JQ0
  • Structure Factors (663 Kb)
  • Retrieve 5JQ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JQ0 from S2C, [Save to disk]
  • Re-refined 5jq0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JQ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JQ0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jq0] [5jq0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5JQ0: [Carb_anhydrase ] by SMART
    • Other resources with information on 5JQ0
  • Community annotation for 5JQ0 at PDBWiki (http://pdbwiki.org)

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