5JQ2 Oxidoreductase date May 04, 2016
title Crystal Structure Of The Ru(Bpy)2phena Functionalized P450 B Heme Domain Mutant In Complex With N-Palmitoylglycine
authors M.Kloos
compound source
Molecule: P450 Bm3 L407c Heme Domain Mutant
Chain: A, B
Synonym: Cytochrome P450(Bm-3),Cytochrome P450bm-3,Fatty Ac Monooxygenase,Flavocytochrome P450 Bm3;
Ec: 1.14.14.1,1.6.2.4
Engineered: Yes
Mutation: Yes
Other_details: A Ru(Bpy)2)Phena Was Covalently Attached To Native Single Cysteine (L407c) Mutant Of P450 Bm3 Mutant (P Translational Modification).
Organism_scientific: Bacillus Megaterium
Organism_taxid: 1348623
Strain: Atcc 14581 Dsm 32 Jcm 2506 Nbrc 15308 Ncimb Nctc 10342 Vkm B-512;
Gene: Cyp102a1, Cyp102, Bg04_163
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pc-Wori
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.880 112.540 156.360 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 140, HEM, RU8 enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene BG04
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (5jq2.pdb1.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 5JQ2
  • CSU: Contacts of Structural Units for 5JQ2
  • Structure Factors (713 Kb)
  • Retrieve 5JQ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JQ2 from S2C, [Save to disk]
  • Re-refined 5jq2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JQ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JQ2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jq2_A] [5jq2] [5jq2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JQ2
  • Community annotation for 5JQ2 at PDBWiki (http://pdbwiki.org)

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