5JQB Viral Protein date May 04, 2016
title Crystal Structure Of Ebola Glycoprotein In Complex With Ibup
authors Y.Zhao, J.Ren, D.I.Stuart
compound source
Molecule: Envelope Glycoprotein 1,Envelope Glycoprotein 1,E Glycoprotein 1;
Chain: A
Synonym: Gp1,2,Gp,Gp1,2,Gp,Gp1,2,Gp
Engineered: Yes
Mutation: Yes
 Organism_scientific: Ebola Virus - Mayinga, Zaire, 1976
Organism_taxid: 128952
Gene: Gp
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Envelope Glycoprotein 2
Chain: B
Synonym: Gp1,2,Gp
Engineered: Yes
Organism_scientific: Ebola Virus - Mayinga, Zaire, 1976
Organism_taxid: 128952
Gene: Gp
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: H 3 2
R_factor 0.199 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.760 113.760 306.150 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.68 Å
ligand BMA, GOL, IBP, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (5jqb.pdb1.gz) 379 Kb
  • LPC: Ligand-Protein Contacts for 5JQB
  • CSU: Contacts of Structural Units for 5JQB
  • Structure Factors (1449 Kb)
  • Retrieve 5JQB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JQB from S2C, [Save to disk]
  • Re-refined 5jqb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JQB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JQB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jqb_B] [5jqb] [5jqb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JQB
  • Community annotation for 5JQB at PDBWiki (http://pdbwiki.org)

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