5JQG	Structural Protein	date	May 04, 2016
title	An Apo Tubulin-Rb-Ttl Complex Structure Used For Side-By-Sid Comparison
authors	Y.X.Wang, J.H.Naismith, X.Zhu
compound		source
Molecule: Tubulin Alpha-1b Chain Chain: A, C Synonym: Alpha-Tubulin Ubiquitous,Tubulin K-Alpha-1,Tubulin Ubiquitous Chain;		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823
Molecule: Tubulin Beta Chain Chain: B, D Synonym: Beta-Tubulin		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823
Molecule: Stathmin-4 Chain: E Fragment: Unp Residues 49-189 Synonym: Stathmin-Like Protein B3,Rb3 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Stmn4 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3)
Molecule: Uncharacterized Protein Chain: F Synonym: Tubulin Tyrosine Ligase Engineered: Yes		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Gene: Ttl Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3)
symmetry	Space Group: P 21 21 21	R_factor 0.181 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.050 158.120 180.630 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.24 Å
ligand	ACP, CA, CL, GDP, GTP, MES, MG	enzyme
Gene Ontology	Chain Function Process Component A, C D, B E F
Primary reference	Pironetin reacts covalently with cysteine-316 of alpha-tubulin to destabilize microtubule., Yang J, Wang Y, Wang T, Jiang J, Botting CH, Liu H, Chen Q, Yang J, Naismith JH, Zhu X, Chen L, Nat Commun. 2016 Jun 30;7:12103. doi: 10.1038/ncomms12103. PMID:27357539

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (727 Kb) [Save to disk] Biological Unit Coordinates (5jqg.pdb1.gz) 714 Kb LPC: Ligand-Protein Contacts for 5JQG CSU: Contacts of Structural Units for 5JQG Structure Factors (3024 Kb) Retrieve 5JQG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JQG from S2C, [Save to disk] Re-refined 5jqg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JQG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5JQG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jqg_D] [5jqg_C] [5jqg] [5jqg_E] [5jqg_F] [5jqg_A] [5jqg_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5JQG: [Tubulin] [Tubulin_C ] by SMART

Other resources with information on 5JQG

Community annotation for 5JQG at PDBWiki (http://pdbwiki.org)

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