5JTJ Hydrolase date May 09, 2016
title Usp7cd-Ctp In Complex With Ubiquitin
authors J.M.Murray, L.Rouge
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7,Ubiquitin Terminal Hydrolase 7;
Chain: A
Fragment: Unp Residues 193-538 Linked Via Ggsgg To Residues 1102;
Synonym: Deubiquitinating Enzyme 7,Herpesvirus-Associated U Specific Protease,Ubiquitin Thioesterase 7,Ubiquitin-Specif Processing Protease 7,Deubiquitinating Enzyme 7,Herpesvirus Associated Ubiquitin-Specific Protease,Ubiquitin Thioestera Ubiquitin-Specific-Processing Protease 7;
Ec: 3.4.19.12
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp7, Hausp
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Polyubiquitin-B
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 62 2 2
R_factor 0.191 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.060 148.060 179.950 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.32 Å
ligand CA enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (5jtj.pdb1.gz) 153 Kb
  • Biological Unit Coordinates (5jtj.pdb2.gz) 604 Kb
  • LPC: Ligand-Protein Contacts for 5JTJ
  • CSU: Contacts of Structural Units for 5JTJ
  • Structure Factors (344 Kb)
  • Retrieve 5JTJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JTJ from S2C, [Save to disk]
  • Re-refined 5jtj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JTJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JTJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jtj] [5jtj_A] [5jtj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5JTJ: [UBQ ] by SMART
    • Other resources with information on 5JTJ
  • Community annotation for 5JTJ at PDBWiki (http://pdbwiki.org)

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