5JVO Dna Binding Protein date May 11, 2016
title Crystal Structure Of The Arginine Repressor From The Pathoge Bacterium Corynebacterium Pseudotuberculosis
authors R.B.Mariutti, A.Ullah, M.T.Murakami, R.K.Arni
compound source
Molecule: Arginine Repressor
Chain: A, B
Engineered: Yes
 Organism_scientific: Corynebacterium Pseudotuberculosis
Organism_taxid: 1719
Gene: Argr, Cpe19_0967
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 3
R_factor 0.180 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.191 83.191 83.191 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SO4, TYR enzyme
Gene CPE19
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5jvo.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 5JVO
  • CSU: Contacts of Structural Units for 5JVO
  • Structure Factors (317 Kb)
  • Retrieve 5JVO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JVO from S2C, [Save to disk]
  • Re-refined 5jvo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JVO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JVO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jvo_B] [5jvo_A] [5jvo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JVO
  • Community annotation for 5JVO at PDBWiki (http://pdbwiki.org)

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