5JW7 Ligase date May 11, 2016
title Crystal Structure Of Sopa-Trim56 Complex
authors S.Bhogaraju, I.Dikic
compound source
Molecule: E3 Ubiquitin-Protein Ligase Sopa
Chain: A
Synonym: Salmonella Outer Protein A,Secreted Effector Prote
Ec: 6.3.2.-
Engineered: Yes
 Organism_scientific: Salmonella Enterica Subsp. Enterica Se Typhimurium;
Organism_taxid: 90371
Gene: Sopa, Stm2066
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: E3 Ubiquitin-Protein Ligase Trim56
Chain: B
Synonym: Ring Finger Protein 109,Tripartite Motif-Containin 56;
Ec: 6.3.2.-
Engineered: Yes
Other_details: Binds To 2 Zn Atoms.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trim56, Rnf109
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 1 2
R_factor 0.223 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.015 71.015 122.944 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5jw7.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 5JW7
  • CSU: Contacts of Structural Units for 5JW7
  • Structure Factors (230 Kb)
  • Retrieve 5JW7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JW7 from S2C, [Save to disk]
  • Re-refined 5jw7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JW7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JW7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jw7_A] [5jw7] [5jw7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JW7
  • Community annotation for 5JW7 at PDBWiki (http://pdbwiki.org)

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