5JYG Structural Protein date May 13, 2016
title Cryo-Em Structure Of The Mamk Filament At 6.5 A
authors J.R.C.Bergeron, R.Hutto, J.M.Kollman
compound source
Molecule: Actin-Like Atpase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N
Engineered: Yes
 Organism_scientific: Magnetospirillum Magneticum (Strain Am Atcc 700264);
Organism_taxid: 342108
Strain: Amb-1 Atcc 700264
Gene: Amb0965
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 6.50 Å
ligand ADP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, N, K, E, B, H, M, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (607 Kb) [Save to disk]
  • Biological Unit Coordinates (5jyg.pdb1.gz) 599 Kb
  • LPC: Ligand-Protein Contacts for 5JYG
  • CSU: Contacts of Structural Units for 5JYG
  • Retrieve 5JYG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JYG from S2C, [Save to disk]
    • View 5JYG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JYG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jyg] [5jyg_C] [5jyg_N] [5jyg_I] [5jyg_H] [5jyg_D] [5jyg_M] [5jyg_F] [5jyg_B] [5jyg_K] [5jyg_L] [5jyg_E] [5jyg_A] [5jyg_G] [5jyg_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JYG
  • Community annotation for 5JYG at PDBWiki (http://pdbwiki.org)

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