5JYM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CA	enzyme
Gene Ontology	Chain Function Process Component C, A
Primary reference	Disruption of cell adhesion by an antibody targeting the cell-adhesive intermediate (X-dimer) of human P-cadherin., Kudo S, Caaveiro JM, Nagatoishi S, Miyafusa T, Matsuura T, Sudou Y, Tsumoto K, Sci Rep. 2017 Jan 3;7:39518. doi: 10.1038/srep39518. PMID:28045038

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk] Biological Unit Coordinates (5jym.pdb1.gz) 282 Kb LPC: Ligand-Protein Contacts for 5JYM CSU: Contacts of Structural Units for 5JYM Structure Factors (2442 Kb) Retrieve 5JYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JYM from S2C, [Save to disk] Re-refined 5jym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JYM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jym] [5jym_A] [5jym_B] [5jym_C] [5jym_D] SWISS-PROT database:

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