5K0I Isomerase Isomerase Inhibitor date May 17, 2016
title Mpges1 Bound To An Inhibitor
authors J.G.Luz, S.L.Kuklish
compound source
Molecule: Prostaglandin E Synthase
Chain: A
Synonym: Microsomal Glutathione S-Transferase 1-Like 1,Mgst Microsomal Prostaglandin E Synthase 1,Mpges-1,P53-Induced G Protein;
Ec: 5.3.99.3
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptges, Mgst1l1, Mpges1, Pges, Pig12
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: H 3
R_factor 0.145 R_Free 0.159
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.444 77.444 123.565 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.30 Å
ligand 6PW, BOG, CSO, GSH, PG4 enzyme Isomerase E.C.5.3.99.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • glutathione peroxidase activ...


    • Primary referenceCharacterization of 3,3-dimethyl substituted N-aryl piperidines as potent microsomal prostaglandin E synthase-1 inhibitors., Kuklish SL, Antonysamy S, Bhattachar SN, Chandrasekhar S, Fisher MJ, Fretland AJ, Gooding K, Harvey A, Hughes NE, Luz JG, Manninen PR, McGee JE, Navarro A, Norman BH, Partridge KM, Quimby SJ, Schiffler MA, Sloan AV, Warshawsky AM, York JS, Yu XP, Bioorg Med Chem Lett. 2016 Oct 1;26(19):4824-8. doi: 10.1016/j.bmcl.2016.08.023. , Epub 2016 Aug 10. PMID:27554445
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (5k0i.pdb1.gz) 167 Kb
  • LPC: Ligand-Protein Contacts for 5K0I
  • CSU: Contacts of Structural Units for 5K0I
  • Structure Factors (900 Kb)
  • Retrieve 5K0I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K0I from S2C, [Save to disk]
  • Re-refined 5k0i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5K0I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5K0I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k0i] [5k0i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5K0I
  • Community annotation for 5K0I at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science