OCA Atlas for 5K59

5K59

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CL, PG4, PO4

enzyme

Gene

SAUSA300 ; SAUSA300

Gene
Ontology

Chain	Function	Process	Component
C, A, D, B

Primary reference

Context matters: The importance of dimerization-induced conformation of the LukGH leukocidin of Staphylococcus aureus for the generation of neutralizing antibodies., Badarau A, Rouha H, Malafa S, Battles MB, Walker L, Nielson N, Dolezilkova I, Teubenbacher A, Banerjee S, Maierhofer B, Weber S, Stulik L, Logan DT, Welin M, Mirkina I, Pleban C, Zauner G, Gross K, Jagerhofer M, Magyarics Z, Nagy E, MAbs. 2016 Jul 28:0. PMID:27467113

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (665 Kb) [Save to disk]

Biological Unit Coordinates (5k59.pdb1.gz) 333 Kb

Biological Unit Coordinates (5k59.pdb2.gz) 330 Kb

LPC: Ligand-Protein Contacts for 5K59

CSU: Contacts of Structural Units for 5K59

Structure Factors (1384 Kb)

Retrieve 5K59 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5K59 from S2C, [Save to disk]

Re-refined 5k59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5K59 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5k59] [5k59_A] [5k59_B] [5k59_C] [5k59_D] [5k59_E] [5k59_F] [5k59_H] [5k59_L]

SWISS-PROT database:

Domains found in 5K59: [IG_like] [IGv ] by SMART

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