5K6Y date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FUC, NAG enzyme
Primary referenceMolecular basis of sidekick-mediated cell-cell adhesion and specificity., Goodman KM, Yamagata M, Jin X, Mannepalli S, Katsamba PS, Ahlsen G, Sergeeva AP, Honig B, Sanes JR, Shapiro L, Elife. 2016 Sep 19;5. pii: e19058. doi: 10.7554/eLife.19058. PMID:27644106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (236 Kb) [Save to disk]
  • Biological Unit Coordinates (5k6y.pdb1.gz) 229 Kb
  • Biological Unit Coordinates (5k6y.pdb2.gz) 118 Kb
  • Biological Unit Coordinates (5k6y.pdb3.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 5K6Y
  • CSU: Contacts of Structural Units for 5K6Y
  • Structure Factors (264 Kb)
  • Retrieve 5K6Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K6Y from S2C, [Save to disk]
  • Re-refined 5k6y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5K6Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k6y] [5k6y_A] [5k6y_B]
  • SWISS-PROT database:
  • Domains found in 5K6Y: [IG_like] [IGc2 ] by SMART

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