5K71 Hydrolase date May 25, 2016
title Apo Dbr1
authors N.E.Clark, A.B.Taylor, P.J.Hart
compound source
Molecule: Rna Lariat Debranching Enzyme, Putative
Chain: A, B, C, D, E
Engineered: Yes
 Organism_scientific: Entamoeba Histolytica
Organism_taxid: 5759
Gene: Ehi_062730
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.110 142.163 214.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.57 Å
ligand SO4 enzyme
Gene EHI
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B
  • RNA lariat debranching enzym...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (606 Kb) [Save to disk]
  • Biological Unit Coordinates (5k71.pdb1.gz) 123 Kb
  • Biological Unit Coordinates (5k71.pdb2.gz) 124 Kb
  • Biological Unit Coordinates (5k71.pdb3.gz) 124 Kb
  • Biological Unit Coordinates (5k71.pdb4.gz) 124 Kb
  • Biological Unit Coordinates (5k71.pdb5.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 5K71
  • CSU: Contacts of Structural Units for 5K71
  • Structure Factors (1503 Kb)
  • Retrieve 5K71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K71 from S2C, [Save to disk]
  • Re-refined 5k71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5K71 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5K71
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k71] [5k71_B] [5k71_C] [5k71_D] [5k71_A] [5k71_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5K71
  • Community annotation for 5K71 at PDBWiki (http://pdbwiki.org)

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