5K7Q Plant Protein date May 26, 2016
title Microed Structure Of Thaumatin At 2.5 A Resolution
authors M.J.De La Cruz, J.Hattne, D.Shi, P.Seidler, J.Rodriguez, F.E.Reye M.R.Sawaya, D.Cascio, D.Eisenberg, T.Gonen
compound source
Molecule: Thaumatin-1
Chain: A
Synonym: Thaumatin I
 Organism_scientific: Thaumatococcus Daniellii
Organism_common: Katemfe
Organism_taxid: 4621
symmetry Space Group: P 41 21 2
R_factor 0.251 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.118 58.118 150.307 90.00 90.00 90.00
method Electron Crystallographyresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAtomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED., de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T, Nat Methods. 2017 Feb 13;14(4):399-402. doi: 10.1038/nmeth.4178. PMID:28192420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (5k7q.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 5K7Q
  • Structure Factors (858 Kb)
  • Retrieve 5K7Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K7Q from S2C, [Save to disk]
  • Re-refined 5k7q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5K7Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5K7Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k7q] [5k7q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5K7Q
  • Community annotation for 5K7Q at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science