5KDO		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GDP	enzyme
Gene Ontology	Chain Function Process Component A B G
Primary reference	A conserved hydrophobic core in Galphai1 regulates G protein activation and release from activated receptor., Kaya AI, Lokits AD, Gilbert JA, Iverson TM, Meiler J, Hamm HE, J Biol Chem. 2016 Jul 26. pii: jbc.M116.745513. PMID:27462082

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk] Biological Unit Coordinates (5kdo.pdb1.gz) 121 Kb LPC: Ligand-Protein Contacts for 5KDO CSU: Contacts of Structural Units for 5KDO Structure Factors (1436 Kb) Retrieve 5KDO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KDO from S2C, [Save to disk] Re-refined 5kdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KDO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kdo] [5kdo_A] [5kdo_B] [5kdo_G] SWISS-PROT database: Domains found in 5KDO: [GGL] [G_alpha] [G_gamma] [WD40 ] by SMART

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