5KE6 mouse Klf4 ZnF1-3 and TpG/CpA sequence DNA complex structure date
authors Hashimoto, H., Cheng, X.
compound source
symmetry
R_factor
R_Free 0.2337
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.99
ligand ZN enzyme
Primary referenceDistinctive Klf4 mutants determine preference for DNA methylation status., Hashimoto H, Wang D, Steves AN, Jin P, Blumenthal RM, Zhang X, Cheng X, Nucleic Acids Res. 2016 Sep 4. pii: gkw774. PMID:27596594
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (5ke6.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 5KE6
  • CSU: Contacts of Structural Units for 5KE6
  • Structure Factors (252 Kb)
  • Retrieve 5KE6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KE6 from S2C, [Save to disk]
  • Re-refined 5ke6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KE6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KE6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ke6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ke6] [5ke6_A] [5ke6_B] [5ke6_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KE6: [ZnF_C2H2 ] by SMART
  • Other resources with information on 5KE6
  • Community annotation for 5KE6 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science