5KIC Transport Protein date Jun 16, 2016
title Long-Sought Stabilization Of Berkelium(Iv) In Solution: An A Within The Heavy Actinide Series
authors P.B.Rupert, R.K.Strong
compound source
Molecule: Neutrophil Gelatinase-Associated Lipocalin
Chain: A, B, C
Synonym: Ngal,25 Kda Alpha-2-Microglobulin-Related Subunit Lipocalin-2,Oncogene 24p3,Siderocalin Lcn2,P25;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lcn2, Hnl, Ngal
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.205 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.574 119.574 108.839 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 4OL, CF, CL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceChelation and stabilization of berkelium in oxidation state +IV., Deblonde GJ, Sturzbecher-Hoehne M, Rupert PB, An DD, Illy MC, Ralston CY, Brabec J, de Jong WA, Strong RK, Abergel RJ, Nat Chem. 2017 Sep;9(9):843-849. doi: 10.1038/nchem.2759. Epub 2017 Apr 10. PMID:28837177
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (5kic.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (5kic.pdb2.gz) 61 Kb
  • Biological Unit Coordinates (5kic.pdb3.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 5KIC
  • CSU: Contacts of Structural Units for 5KIC
  • Structure Factors (1284 Kb)
  • Retrieve 5KIC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KIC from S2C, [Save to disk]
  • Re-refined 5kic structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KIC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KIC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kic_A] [5kic_B] [5kic_C] [5kic]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KIC
  • Community annotation for 5KIC at PDBWiki (http://pdbwiki.org)

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