5KM8 Hydrolase date Jun 26, 2016
title Human Histidine Triad Nucleotide Binding Protein 2 (Hhint2) Complex
authors K.M.Maize, B.C.Finzel
compound source
Molecule: Histidine Triad Nucleotide-Binding Protein 2, Mitochondrial;
Chain: A, B
Synonym: Hint-2,Hint-3,Hit-17kda
Ec: 3.-.-.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hint2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg9
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.990 73.852 77.464 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, DMS, EDO, GOL, L8P enzyme Hydrolase E.C.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Crystal Structure-Based Guide to the Design of Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) Activated ProTides., Maize KM, Shah R, Strom A, Kumarapperuma SC, Zhou AL, Wagner CR, Finzel BC, Mol Pharm. 2017 Oct 2. doi: 10.1021/acs.molpharmaceut.7b00664. PMID:28968488
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (5km8.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 5KM8
  • CSU: Contacts of Structural Units for 5KM8
  • Structure Factors (316 Kb)
  • Retrieve 5KM8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KM8 from S2C, [Save to disk]
  • Re-refined 5km8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KM8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KM8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5km8_B] [5km8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KM8
  • Community annotation for 5KM8 at PDBWiki (http://pdbwiki.org)

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