5KPK Transferase Transferase Inhibitor date Jul 04, 2016
title Glycogen Synthase Kinase 3 Beta Complexed With Brd0209
authors D.Lakshminarasimhan, A.White, A.Nadupalli, R.K.Suto
compound source
Molecule: Glycogen Synthase Kinase-3 Beta
Chain: A, B
Synonym: Gsk-3 Beta, Serinethreonine-Protein Kinase Gsk3b
Ec: 2.7.11.26, 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gsk3b
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pacg2t Baculogold
symmetry Space Group: P 1
R_factor 0.167 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.367 67.709 67.558 79.56 88.18 76.50
method X-Ray Diffractionresolution 2.40 Å
ligand 6VK, PTR enzyme Transferase E.C.2.7.11.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein serine/threonine kin...
  • excitatory postsynaptic pote...
  • positive regulation of mitoc...
  • beta-catenin destruction com...
  • Primary referenceExploiting an Asp-Glu "switch" in glycogen synthase kinase 3 to design paralog-selective inhibitors for use in acute myeloid leukemia., Wagner FF, Benajiba L, Campbell AJ, Weiwer M, Sacher JR, Gale JP, Ross L, Puissant A, Alexe G, Conway A, Back M, Pikman Y, Galinsky I, DeAngelo DJ, Stone RM, Kaya T, Shi X, Robers MB, Machleidt T, Wilkinson J, Hermine O, Kung A, Stein AJ, Lakshminarasimhan D, Hemann MT, Scolnick E, Zhang YL, Pan JQ, Stegmaier K, Holson EB, Sci Transl Med. 2018 Mar 7;10(431). pii: 10/431/eaam8460. doi:, 10.1126/scitranslmed.aam8460. PMID:29515000
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (5kpk.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (5kpk.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 5KPK
  • CSU: Contacts of Structural Units for 5KPK
  • Structure Factors (745 Kb)
  • Retrieve 5KPK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KPK from S2C, [Save to disk]
  • View 5KPK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KPK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kpk_A] [5kpk_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KPK
  • Community annotation for 5KPK at PDBWiki (http://pdbwiki.org)

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