5KQ5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 6VT, ADP, AMP, CL, SO4, STU, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceDiscovery and Preclinical Characterization of 6-Chloro-5-[4-(1-hydroxycyclobutyl)phenyl]-1H-indole-3-carboxylic Acid (PF-06409577), a Direct Activator of Adenosine Monophosphate-activated Protein Kinase (AMPK), for the Potential Treatment of Diabetic Nephropathy., Cameron KO, Kung DW, Kalgutkar AS, Kurumbail RG, Miller R, Salatto CT, Ward J, Withka JM, Bhattacharya SK, Boehm M, Borzilleri KA, Brown JA, Calabrese M, Caspers NL, Cokorinos E, Conn EL, Dowling MS, Edmonds DJ, Eng H, Fernando DP, Frisbie R, Hepworth D, Landro J, Mao Y, Rajamohan F, Reyes AR, Rose CR, Ryder T, Shavnya A, Smith AC, Tu M, Wolford AC, Xiao J, J Med Chem. 2016 Aug 20. PMID:27490827
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (275 Kb) [Save to disk]
  • Biological Unit Coordinates (5kq5.pdb1.gz) 266 Kb
  • LPC: Ligand-Protein Contacts for 5KQ5
  • CSU: Contacts of Structural Units for 5KQ5
  • Structure Factors (693 Kb)
  • Retrieve 5KQ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KQ5 from S2C, [Save to disk]
  • Re-refined 5kq5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KQ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kq5] [5kq5_A] [5kq5_B] [5kq5_C]
  • SWISS-PROT database:
  • Domains found in 5KQ5: [AMPKBI] [CBS] [S_TKc ] by SMART

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