5KR1 Hydrolase Hydrolase Inhibitor date Jul 06, 2016
title Protease Pr5-Drv
authors Z.Liu, K.M.Poole, B.P.Mahon, R.Mckenna, G.E.Fanucci
compound source
Molecule: Protease Pr5-Drv
Chain: A, B
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Pol
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.960 58.000 61.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 017 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEffects of Hinge Region Natural Polymorphisms on Human Immunodeficiency Virus-1 Protease Structure, Dynamics and Drug-Pressure Evolution., Liu Z, Huang X, Hu L, Pham L, Poole KM, Tang Y, Mahon BP, Tang W, Li K, Goldfarb NE, Dunn BM, McKenna R, Fanucci GE, J Biol Chem. 2016 Aug 30. pii: jbc.M116.747568. PMID:27576689
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (5kr1.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 5KR1
  • CSU: Contacts of Structural Units for 5KR1
  • Structure Factors (317 Kb)
  • Retrieve 5KR1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KR1 from S2C, [Save to disk]
  • Re-refined 5kr1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KR1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KR1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kr1] [5kr1_B] [5kr1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KR1
  • Community annotation for 5KR1 at PDBWiki (http://pdbwiki.org)

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