OCA Atlas for 5KZC

5KZC

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BMA, MAN, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, F, C

Primary reference

Minimally Mutated HIV-1 Broadly Neutralizing Antibodies to Guide Reductionist Vaccine Design., Jardine JG, Sok D, Julien JP, Briney B, Sarkar A, Liang CH, Scherer EA, Henry Dunand CJ, Adachi Y, Diwanji D, Hsueh J, Jones M, Kalyuzhniy O, Kubitz M, Spencer S, Pauthner M, Saye-Francisco KL, Sesterhenn F, Wilson PC, Galloway DM, Stanfield RL, Wilson IA, Burton DR, Schief WR, PLoS Pathog. 2016 Aug 25;12(8):e1005815. doi: 10.1371/journal.ppat.1005815., eCollection 2016 Aug. PMID:27560183

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (601 Kb) [Save to disk]

Biological Unit Coordinates (5kzc.pdb1.gz) 201 Kb

Biological Unit Coordinates (5kzc.pdb2.gz) 201 Kb

Biological Unit Coordinates (5kzc.pdb3.gz) 197 Kb

LPC: Ligand-Protein Contacts for 5KZC

CSU: Contacts of Structural Units for 5KZC

Structure Factors (525 Kb)

Retrieve 5KZC in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5KZC from S2C, [Save to disk]

Re-refined 5kzc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KZC in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kzc] [5kzc_A] [5kzc_B] [5kzc_C] [5kzc_D] [5kzc_E] [5kzc_F] [5kzc_G] [5kzc_H] [5kzc_L]

SWISS-PROT database:

Domains found in 5KZC: [IG_like] [IGv ] by SMART

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