5L2T Transferase Transferase Inhibitor date Aug 02, 2016
title The X-Ray Co-Crystal Structure Of Human Cdk6 And Ribociclib.
authors P.Chen, R.A.Ferre, W.Deihl, X.Yu, Y.A.He
compound source
Molecule: Cyclin-Dependent Kinase 6
Chain: A
Fragment: Unp Residues 1-301
Synonym: Cell Division Protein Kinase 6,Serinethreonine-Pr Kinase Plstire;
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk6, Cdkn6
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: I 4
R_factor 0.212 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.227 101.227 60.314 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.37 Å
ligand 6ZZ enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSpectrum and Degree of CDK Drug Interactions Predicts Clinical Performance., Chen P, Lee N, Hu W, Xu M, Ferre RA, Lam H, Bergqvist S, Solowiej J, Diehl W, He YA, Yu X, Nagata A, VanArsdale T, Murray BW, Mol Cancer Ther. 2016 Aug 5. pii: molcanther.0300.2016. PMID:27496135
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (5l2t.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 5L2T
  • CSU: Contacts of Structural Units for 5L2T
  • Structure Factors (359 Kb)
  • Retrieve 5L2T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L2T from S2C, [Save to disk]
  • Re-refined 5l2t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L2T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L2T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l2t] [5l2t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5L2T: [S_TKc ] by SMART
  • Other resources with information on 5L2T
  • Community annotation for 5L2T at PDBWiki (http://pdbwiki.org)

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