5L32 Metal Binding Protein date Aug 02, 2016
title Crystal Structure Of The Zn-Ridc1 Complex Bearing Six Interf Disulfide Bonds
authors L.A.Churchfield, F.A.Tezcan
compound source
Molecule: Soluble Cytochrome B562
Chain: A, B, C, D
Fragment: Unp Residues 23-128
Synonym: Cytochrome B-562
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Cybc
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.060 62.533 72.437 90.00 99.01 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand HEC, P6G, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (5l32.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 5L32
  • CSU: Contacts of Structural Units for 5L32
  • Structure Factors (296 Kb)
  • Retrieve 5L32 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L32 from S2C, [Save to disk]
  • Re-refined 5l32 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5L32 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5L32
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l32_C] [5l32_D] [5l32_A] [5l32] [5l32_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5L32
  • Community annotation for 5L32 at PDBWiki (http://pdbwiki.org)

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