5L3H Hydrolase date May 06, 2016
title Re-Refinement Of 4dd4; Cisplatin Coordination Chemistry Dete At Hen Egg White Lysozyme His15 With Standard Uncertainties
authors J.R.Helliwell, S.W.M.Tanley
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C,Allergen Gal D Iv
Ec: 3.2.1.17
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 43 21 2
R_factor 0.202 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.832 78.832 37.021 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CL, DMS, NA, NH3, PT enzyme Hydrolase E.C.3.2.1.17 BRENDA
note 5L3H supersedes 4DD4
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (5l3h.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 5L3H
  • CSU: Contacts of Structural Units for 5L3H
  • Structure Factors (434 Kb)
  • Retrieve 5L3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L3H from S2C, [Save to disk]
  • Re-refined 5l3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5L3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5L3H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l3h] [5l3h_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5L3H: [LYZ1 ] by SMART
    • Other resources with information on 5L3H
  • Community annotation for 5L3H at PDBWiki (http://pdbwiki.org)

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