5L7F	Hydrolase	date	Jun 03, 2016
title	Crystal Structure Of Mmp12 Mutant K421a In Complex With Rxp4 Conjugated With Fluorophore Cy5,5 In Space Group P21.
authors	L.Tepshi, T.Bordenave, C.Rouanet-Mehouas, L.Devel, V.Dive, E.A.St
compound		source
Molecule: Macrophage Metalloelastase Chain: A, B Synonym: Mme,Macrophage Elastase,Hme,Matrix Metalloproteina 12; Ec: 3.4.24.65 Engineered: Yes Mutation: Yes Other_details: Fragment: Catalytic Domain (Unp Residues 106 Mutations: F171d K241a		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mmp12, Hme Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.176 R_Free 0.195
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.920 70.370 52.220 90.00 104.61 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	6PJ, BR, CA, DMS, EDO, GOL, R47, ZN	enzyme	Hydrolase E.C.3.4.24.65 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Synthesis, in vitro and in vivo evaluation of MMP-12 selective optical probes., Bordenave T, Helle M, Beau F, Georgiadis D, Tepshi L, Bernes M, Yunpeng Y, Levenez L, Poquet E, Nozach H, Razavian M, Toczek J, Stura EA, Dive V, Sadeghi MM, Devel L, Bioconjug Chem. 2016 Aug 26. PMID:27564088

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (5l7f.pdb1.gz) 35 Kb Biological Unit Coordinates (5l7f.pdb2.gz) 36 Kb LPC: Ligand-Protein Contacts for 5L7F CSU: Contacts of Structural Units for 5L7F Structure Factors (679 Kb) Retrieve 5L7F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5L7F from S2C, [Save to disk] Re-refined 5l7f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5L7F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5L7F

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5l7f] [5l7f_A] [5l7f_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5L7F: [ZnMc ] by SMART

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