5LBH	Transport Protein	date	Jun 16, 2016
title	Crystal Structure Of Helicobacter Cinaedi Caip
authors	G.Zanotti, F.Valesse, G.Codolo, M.De Bernard
compound		source
Molecule: Caip Chain: A, B, C, D, E, F, G, H, I, J, K, L Engineered: Yes		Organism_scientific: Helicobacter Cinaedi Organism_taxid: 213 Gene: Hcn_0606 Expression_system: Bacillus Subtilis Expression_system_taxid: 1423 Expression_system_strain: Sms 118 Expression_system_plasmid: Psm214g-Napa
symmetry	Space Group: P 1 21 1	R_factor 0.187 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.746 135.918 93.445 90.00 114.50 90.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	FE	enzyme
Gene	HCN
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	The Helicobacter cinaedi antigen CAIP participates in atherosclerotic inflammation by promoting the differentiation of macrophages in foam cells., D'Elios MM, Vallese F, Capitani N, Benagiano M, Bernardini ML, Rossi M, Rossi GP, Ferrari M, Baldari CT, Zanotti G, de Bernard M, Codolo G, Sci Rep. 2017 Jan 11;7:40515. doi: 10.1038/srep40515. PMID:28074932

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk] Biological Unit Coordinates (5lbh.pdb1.gz) 274 Kb LPC: Ligand-Protein Contacts for 5LBH CSU: Contacts of Structural Units for 5LBH Structure Factors (1350 Kb) Retrieve 5LBH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LBH from S2C, [Save to disk] Re-refined 5lbh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LBH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LBH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lbh_B] [5lbh_L] [5lbh_J] [5lbh] [5lbh_C] [5lbh_H] [5lbh_I] [5lbh_E] [5lbh_D] [5lbh_G] [5lbh_K] [5lbh_F] [5lbh_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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