OCA Atlas for 5LD5

5LD5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, NAD

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, D, B, C

Primary reference

Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase from the Gram-Positive Bacterial Pathogen A. vaginae, an Immunoevasive Factor that Interacts with the Human C5a Anaphylatoxin., Querol-Garcia J, Fernandez FJ, Marin AV, Gomez S, Fulla D, Melchor-Tafur C, Franco-Hidalgo V, Alberti S, Juanhuix J, Rodriguez de Cordoba S, Regueiro JR, Vega MC, Front Microbiol. 2017 Apr 10;8:541. doi: 10.3389/fmicb.2017.00541. eCollection, 2017. PMID:28443070

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (447 Kb) [Save to disk]

Biological Unit Coordinates (5ld5.pdb1.gz) 438 Kb

LPC: Ligand-Protein Contacts for 5LD5

CSU: Contacts of Structural Units for 5LD5

Structure Factors (1311 Kb)

Retrieve 5LD5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5LD5 from S2C, [Save to disk]

Re-refined 5ld5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LD5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ld5_A] [5ld5_B] [5ld5_C] [5ld5_D]

SWISS-PROT database:

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