5LGG Cell Cycle date Jul 07, 2016
title The N-Terminal Wd40 Domain Of Apc1 (Anaphase Promoting Compl 1)
authors Q.Li, S.Aibara, D.Barford
compound source
Molecule: Anaphase-Promoting Complex Subunit 1,Anaphase-Pro Complex Subunit 1,Anaphase-Promoting Complex Subunit 1,Anap Promoting Complex Subunit 1;
Chain: A
Synonym: Apc1,Cyclosome Subunit 1,Mitotic Checkpoint Regula Testis-Specific Gene 24 Protein,Apc1,Cyclosome Subunit 1,Mi Checkpoint Regulator,Testis-Specific Gene 24 Protein,Apc1,C Subunit 1,Mitotic Checkpoint Regulator,Testis-Specific Gene Protein,Apc1,Cyclosome Subunit 1,Mitotic Checkpoint Regulat Specific Gene 24 Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc1, Tsg24
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 2 2 21
R_factor 0.179 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.633 113.262 100.436 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceWD40 domain of Apc1 is critical for the coactivator-induced allosteric transition that stimulates APC/C catalytic activity., Li Q, Chang L, Aibara S, Yang J, Zhang Z, Barford D, Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):10547-52. doi:, 10.1073/pnas.1607147113. Epub 2016 Sep 6. PMID:27601667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (5lgg.pdb1.gz) 130 Kb
  • CSU: Contacts of Structural Units for 5LGG
  • Structure Factors (1623 Kb)
  • Retrieve 5LGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LGG from S2C, [Save to disk]
  • Re-refined 5lgg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LGG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lgg] [5lgg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LGG
  • Community annotation for 5LGG at PDBWiki (http://pdbwiki.org)

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