5LH4 Hydrolase date Jul 08, 2016
title Trypsin Inhibitors For The Treatment Of Pancreatitis - Cpd 1
authors N.Schiering, A.D'Arcy, P.Skaanderup, O.Simic, T.Brandl, J.Woelcke
compound source
Molecule: Cationic Trypsin
Chain: A
Synonym: Beta-Trypsin
Ec: 3.4.21.4
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.152 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.585 58.235 66.666 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.37 Å
ligand 6W4, CA, DMS, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTrypsin inhibitors for the treatment of pancreatitis., Brandl T, Simic O, Skaanderup PR, Namoto K, Berst F, Ehrhardt C, Schiering N, Mueller I, Woelcke J, Bioorg Med Chem Lett. 2016 Jul 17. pii: S0960-894X(16)30742-9. doi:, 10.1016/j.bmcl.2016.07.029. PMID:27476144
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (5lh4.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 5LH4
  • CSU: Contacts of Structural Units for 5LH4
  • Structure Factors (1060 Kb)
  • Retrieve 5LH4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LH4 from S2C, [Save to disk]
    • View 5LH4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LH4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lh4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LH4
  • Community annotation for 5LH4 at PDBWiki (http://pdbwiki.org)

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