5LHY Structural Protein date Jul 13, 2016
title Pb3 Domain Of Human Plk4 (Apo)
authors M.A.Cottee, S.Johnson, S.M.Lea
compound source
Molecule: Serinethreonine-Protein Kinase Plk4
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, 1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y;
Fragment: Unp Residues 884-970
Synonym: Polo-Like Kinase 4,Plk-4,Serinethreonine-Protein Serinethreonine-Protein Kinase Sak;
Ec: 2.7.11.21
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plk4, Sak, Stk18
Expression_system: Escherichia Coli B
Expression_system_taxid: 37762
Expression_system_strain: B834
symmetry Space Group: P 43 21 2
R_factor 0.269 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
220.350 220.350 325.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.31 Å
ligand
enzyme Transferase E.C.2.7.11.21 BRENDA
Primary referenceA key centriole assembly interaction interface between human Plk4 and STIL appears to not be conserved in flies., Cottee MA, Johnson S, Raff JW, Lea SM, Biol Open. 2017 Feb 15. pii: bio.024661. doi: 10.1242/bio.024661. PMID:28202467
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1537 Kb) [Save to disk]
  • Biological Unit Coordinates (5lhy.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (5lhy.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (5lhy.pdb3.gz) 56 Kb
  • Biological Unit Coordinates (5lhy.pdb4.gz) 57 Kb
  • Biological Unit Coordinates (5lhy.pdb5.gz) 57 Kb
  • Biological Unit Coordinates (5lhy.pdb6.gz) 56 Kb
  • Biological Unit Coordinates (5lhy.pdb7.gz) 57 Kb
  • Biological Unit Coordinates (5lhy.pdb8.gz) 57 Kb
  • Biological Unit Coordinates (5lhy.pdb9.gz) 57 Kb
  • CSU: Contacts of Structural Units for 5LHY
  • Structure Factors (7849 Kb)
  • Retrieve 5LHY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LHY from S2C, [Save to disk]
  • Re-refined 5lhy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LHY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LHY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lhy_V] [5lhy_N] [5lhy_J] [5lhy_f] [5lhy] [5lhy_6] [5lhy_I] [5lhy_2] [5lhy_K] [5lhy_t] [5lhy_v] [5lhy_y] [5lhy_R] [5lhy_O] [5lhy_s] [5lhy_g] [5lhy_D] [5lhy_X] [5lhy_H] [5lhy_r] [5lhy_1] [5lhy_8] [5lhy_i] [5lhy_S] [5lhy_T] [5lhy_B] [5lhy_e] [5lhy_w] [5lhy_U] [5lhy_o] [5lhy_x] [5lhy_A] [5lhy_u] [5lhy_j] [5lhy_b] [5lhy_C] [5lhy_P] [5lhy_G] [5lhy_p] [5lhy_4] [5lhy_F] [5lhy_a] [5lhy_l] [5lhy_d] [5lhy_7] [5lhy_3] [5lhy_9] [5lhy_W] [5lhy_n] [5lhy_5] [5lhy_Z] [5lhy_c] [5lhy_M] [5lhy_L] [5lhy_q] [5lhy_E] [5lhy_m] [5lhy_k] [5lhy_Q] [5lhy_Y] [5lhy_h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LHY
  • Community annotation for 5LHY at PDBWiki (http://pdbwiki.org)

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