5LI6 Oxidoreductase date Jul 14, 2016
title Crystal Structure Of Mycobacterium Tuberculosis Cyp126a1 In With N-Isopropyl-N-((3-(4-Methoxyphenyl)-1,2,4-Oxadiazol-5- Methyl)-2-(4-Nitrophenyl)Acetamide
authors C.Levy, A.W.Munro, D.Leys
compound source
Molecule: Putative Cytochrome P450 126
Chain: A, B
Ec: 1.14.-.-
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis (Strain Cdc Oshkosh);
Organism_taxid: 83331
Strain: Cdc 1551 Oshkosh
Gene: Cyp126, Mt0802
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.186 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.620 59.660 118.470 90.00 98.03 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand 6XF, HEM enzyme Oxidoreductase E.C.1.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Characterization and Ligand/Inhibitor Identification Provide Functional Insights into the Mycobacterium tuberculosis Cytochrome P450 CYP126A1., Chenge JT, Duyet LV, Swami S, McLean KJ, Kavanagh ME, Coyne AG, Rigby SE, Cheesman MR, Girvan HM, Levy CW, Rupp B, von Kries JP, Abell C, Leys D, Munro AW, J Biol Chem. 2017 Jan 27;292(4):1310-1329. doi: 10.1074/jbc.M116.748822. Epub, 2016 Dec 8. PMID:27932461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5li6.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 5LI6
  • CSU: Contacts of Structural Units for 5LI6
  • Structure Factors (1492 Kb)
  • Retrieve 5LI6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LI6 from S2C, [Save to disk]
  • Re-refined 5li6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LI6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LI6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5li6] [5li6_A] [5li6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LI6
  • Community annotation for 5LI6 at PDBWiki (http://pdbwiki.org)

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