5LJ2 Transcription date Jul 17, 2016
title N-Terminal Bromodomain Of Human Brd4 With 5-(5-Aminopyridin- (((3r,4r)-3-((1,1-Dioxidotetrahydro-2h-Thiopyran-4-Yl)Metho Piperidin-4-Yl)Amino)-3-Methyl-1,7-Naphthyridin-2(1h)-One
authors C.Chung, P.Bamborough, E.Demont
compound source
Molecule: Bromodomain-Containing Protein 4
Chain: A
Synonym: Protein Hunk1
Engineered: Yes
Other_details: Sm Residues Residual From Cleavage Of Expres
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd4, Hunk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet26b
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.520 44.280 78.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.19 Å
ligand 6XW, EDO enzyme
Primary referenceA Chemical Probe for the ATAD2 Bromodomain., Bamborough P, Chung CW, Demont EH, Furze RC, Bannister AJ, Che KH, Diallo H, Douault C, Grandi P, Kouzarides T, Michon AM, Mitchell DJ, Prinjha RK, Rau C, Robson S, Sheppard RJ, Upton R, Watson RJ, Angew Chem Int Ed Engl. 2016 Sep 12;55(38):11382-6. doi: 10.1002/anie.201603928. , Epub 2016 Aug 17. PMID:27530368
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5lj2.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 5LJ2
  • CSU: Contacts of Structural Units for 5LJ2
  • Structure Factors (1101 Kb)
  • Retrieve 5LJ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LJ2 from S2C, [Save to disk]
  • Re-refined 5lj2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LJ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LJ2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lj2_A] [5lj2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5LJ2: [BROMO ] by SMART
    • Other resources with information on 5LJ2
  • Community annotation for 5LJ2 at PDBWiki (http://pdbwiki.org)

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