5LN1	Ubiquitin-Binding Protein	date	Aug 02, 2016
title	Structure Of Ubiquitylated-Rpn10 From Yeast;
authors	T.Keren-Kaplan, I.Attali, O.Levin-Kravets, G.Prag
compound		source
Molecule: 26s Proteasome Regulatory Subunit Rpn10 Chain: A Fragment: Unp Residues 1-191 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rpn10, Mcb1, Sun1, Yhr200w Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Polyubiquitin-B Chain: U Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.190 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.290 49.700 81.330 90.00 130.55 90.00
method	X-Ray Diffraction	resolution	3.14 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of ubiquitylated-Rpn10 provides insight into its autoregulation mechanism., Keren-Kaplan T, Zeev Peters L, Levin-Kravets O, Attali I, Kleifeld O, Shohat N, Artzi S, Zucker O, Pilzer I, Reis N, Glickman MH, Ben-Aroya S, Prag G, Nat Commun. 2016 Oct 4;7:12960. doi: 10.1038/ncomms12960. PMID:27698474

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (5ln1.pdb1.gz) 82 Kb CSU: Contacts of Structural Units for 5LN1 Structure Factors (69 Kb) Retrieve 5LN1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LN1 from S2C, [Save to disk] Re-refined 5ln1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LN1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LN1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ln1] [5ln1_A] [5ln1_U] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5LN1: [UBQ] [VWA ] by SMART

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