5LNP Signaling Protein date Aug 05, 2016
title Domain-Swapped Dimer Of Human Dishevelled2 Dep Domain: Monoc Crystal Form Crystallised From Monomeric Fraction
authors M.Renko, M.V.Gammons, M.Bienz
compound source
Molecule: Segment Polarity Protein Dishevelled Homolog Dvl-
Chain: A, C, D
Fragment: Dep Domain, Unp Residues 416-510
Synonym: Dishevelled-2,Dsh Homolog 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dvl2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm-41

Molecule: Segment Polarity Protein Dishevelled Homolog Dvl-
Chain: B
Fragment: Dep Domain, Unp Residues 416-510
Synonym: Dishevelled-2,Dsh Homolog 2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dvl2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm-41
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.583 60.181 66.292 90.00 117.71 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand CSO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceWnt Signalosome Assembly by DEP Domain Swapping of Dishevelled., Gammons MV, Renko M, Johnson CM, Rutherford TJ, Bienz M, Mol Cell. 2016 Oct 6;64(1):92-104. doi: 10.1016/j.molcel.2016.08.026. Epub 2016, Sep 29. PMID:27692984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (5lnp.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 5LNP
  • CSU: Contacts of Structural Units for 5LNP
  • Structure Factors (1973 Kb)
  • Retrieve 5LNP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LNP from S2C, [Save to disk]
  • Re-refined 5lnp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LNP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LNP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lnp_B] [5lnp] [5lnp_D] [5lnp_A] [5lnp_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5LNP: [DEP ] by SMART
  • Other resources with information on 5LNP
  • Community annotation for 5LNP at PDBWiki (http://pdbwiki.org)

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