5LP3 Hydrolase date Aug 11, 2016
title Three Tetrameric Rings Of Isoaspartyl Dipeptidase Fitted In Volume.
authors H.Garcia-Seisdedos, C.Empereur-Mot, N.Elad, E.D.Levy
compound source
Molecule: Isoaspartyl Dipeptidase
Chain: B, C, D, E, A, F, G, H, I, J, K, L
Ec: 3.4.19.-
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Iada, Yjif, B4328, Jw4291
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 10.50 Å
ligand KCX enzyme Hydrolase E.C.3.4.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceProteins evolve on the edge of supramolecular self-assembly., Garcia-Seisdedos H, Empereur-Mot C, Elad N, Levy ED, Nature. 2017 Aug 10;548(7666):244-247. doi: 10.1038/nature23320. Epub 2017 Aug 2. PMID:28783726
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (664 Kb) [Save to disk]
  • Biological Unit Coordinates (5lp3.pdb1.gz) 660 Kb
  • LPC: Ligand-Protein Contacts for 5LP3
  • CSU: Contacts of Structural Units for 5LP3
  • Retrieve 5LP3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LP3 from S2C, [Save to disk]
    • View 5LP3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LP3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lp3_K] [5lp3_H] [5lp3_F] [5lp3_J] [5lp3_G] [5lp3_C] [5lp3_D] [5lp3_A] [5lp3_B] [5lp3_L] [5lp3_E] [5lp3_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LP3
  • Community annotation for 5LP3 at PDBWiki (http://pdbwiki.org)

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