5LPC Oxidoreductase date Aug 12, 2016
title Crystal Structure Of Vanadium-Dependent Haloperoxidase From
authors A.Frank, M.Groll
compound source
Molecule: Vanadium-Dependent Bromoperoxidase
Chain: A
Engineered: Yes
 Organism_scientific: Acaryochloris Marina
Organism_taxid: 155978
Gene: Am1_4975
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: F 41 3 2
R_factor 0.207 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
306.160 306.160 306.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand PO4 enzyme
Gene AM1
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxidase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (5lpc.pdb1.gz) 2332 Kb
  • LPC: Ligand-Protein Contacts for 5LPC
  • CSU: Contacts of Structural Units for 5LPC
  • Structure Factors (433 Kb)
  • Retrieve 5LPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LPC from S2C, [Save to disk]
  • Re-refined 5lpc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LPC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lpc from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lpc_A] [5lpc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LPC
  • Community annotation for 5LPC at PDBWiki (http://pdbwiki.org)

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