5LSS	Transferase	date	Sep 05, 2016
title	Structure Of The Epigenetic Oncogene Mmset And Inhibition By Sinefungin Derivatives
authors	D.Tisi, P.Pathuri
compound		source
Molecule: Histone-Lysine N-Methyltransferase Setd2 Chain: A Fragment: Unp Residues 1433-1711 Synonym: Hif-1,Huntingtin Yeast Partner B,Huntingtin-Intera Protein 1,Hip-1,Huntingtin-Interacting Protein B,Lysine N- Methyltransferase 3a,Set Domain-Containing Protein 2,Hset2, Ec: 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Setd2, Hif1, Hypb, Kiaa1732, Kmt3a, Set2, Hspc069 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Codon Plus
symmetry	Space Group: P 21 21 21	R_factor 0.162 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.330 77.216 76.358 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.79 Å
ligand	76H, SCN, ZN	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the Epigenetic Oncogene MMSET and Inhibition by N-Alkyl Sinefungin Derivatives., Tisi D, Chiarparin E, Tamanini E, Pathuri P, Coyle JE, Hold A, Holding FP, Amin N, Martin AC, Rich SJ, Berdini V, Yon J, Acklam P, Burke R, Drouin L, Harmer JE, Jeganathan F, van Montfort RL, Newbatt Y, Tortorici M, Westlake M, Wood A, Hoelder S, Heightman TD, ACS Chem Biol. 2016 Sep 27. PMID:27571355

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (5lss.pdb1.gz) 89 Kb LPC: Ligand-Protein Contacts for 5LSS CSU: Contacts of Structural Units for 5LSS Structure Factors (492 Kb) Retrieve 5LSS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LSS from S2C, [Save to disk] Re-refined 5lss structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LSS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LSS

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lss_A] [5lss] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5LSS: [AWS] [PostSET] [SET ] by SMART

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