5LY1 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 48V, CL, DTY, GOL, NI, PPI, ZN enzyme
Primary referenceSubstrate- and cofactor-independent inhibition of histone demethylase KDM4C., Leurs U, Lohse B, Rand KD, Ming S, Riise ES, Cole PA, Kristensen JL, Clausen RP, ACS Chem Biol. 2014 Sep 19;9(9):2131-8. doi: 10.1021/cb500374f. Epub 2014 Jul 17. PMID:25014588
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (5ly1.pdb1.gz) 234 Kb
  • LPC: Ligand-Protein Contacts for 5LY1
  • CSU: Contacts of Structural Units for 5LY1
  • Structure Factors (3483 Kb)
  • Retrieve 5LY1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LY1 from S2C, [Save to disk]
  • Re-refined 5ly1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LY1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ly1] [5ly1_A] [5ly1_B] [5ly1_C] [5ly1_D] [5ly1_E]
  • SWISS-PROT database:

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