5LYM	Hydrolase (O-Glycosyl)	date	Jul 20, 1995
title	Studies Of Monoclinic Hen Egg White Lysozyme. Iv. X-Ray Refinement At 1.8 Angstrom Resolution And A Comparison Of The Variable Regions In The Polymorphic Forms
authors	S.T.Rao, M.Sundaralingam
compound		source
Molecule: Lysozyme Chain: A, B Ec: 3.2.1.17		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Cell: Egg White
symmetry	Space Group: P 1 21 1	R_factor 0.189 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 28.000 62.500 60.900 90.00 90.80 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	NO3	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
note	5LYM supersedes 1LYM
related structures	by homologous chain: 1DI3, 1G7I
Gene Ontology	Chain Function Process Component A, B
Primary reference	Studies of monoclinic hen egg-white lysozyme. IV. X-ray refinement at 1.8 A resolution and a comparison of the variable regions in the polymorphic forms., Rao ST, Sundaralingam M, Acta Crystallogr D Biol Crystallogr. 1996 Jan 1;52(Pt 1):170-5. PMID:15299739

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (5lym.pdb1.gz) 23 Kb Biological Unit Coordinates (5lym.pdb2.gz) 23 Kb LPC: Ligand-Protein Contacts for 5LYM CSU: Contacts of Structural Units for 5LYM Likely Quarternary Molecular Structure file(s) for 5LYM Structure Factors (90 Kb) Retrieve 5LYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LYM from S2C, [Save to disk] Re-refined 5lym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LYM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LYM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 5LYM, from MSDmotif at EBI Genome occurence of 5LYM's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d5lyma_, region A [Jmol] [rasmolscript] [script source]     - Domain d5lymb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lym] [5lym_B] [5lym_A] SWISS-PROT database: [P00698] Domain organization of [LYSC_CHICK] by SWISSPFAM Domain found in 5LYM: [LYZ1 ] by SMART

Other resources with information on 5LYM

Community annotation for 5LYM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 5LYM from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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