5M0W Signaling Protein date Oct 06, 2016
title N-Terminal Domain Of Mouse Shisa 3
authors B.Lohkamp, J.R.M.Ojala
compound source
Molecule: Protein Shisa-3 Homolog
Chain: A
Fragment: Unp Residues 22-95
Engineered: Yes
Other_details: N-Terminal Domain With Strep Tag
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Shisa3
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_variant: H5
Expression_system_plasmid: Pvl1393
symmetry Space Group: P 43 21 2
R_factor 0.115 R_Free 0.137
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.765 59.765 48.591 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.39 Å
ligand EDO, GOL, MES, PCA, PEG, SO4 enzyme
Primary referenceAb initio solution of macromolecular crystal structures without direct methods., McCoy AJ, Oeffner RD, Wrobel AG, Ojala JR, Tryggvason K, Lohkamp B, Read RJ, Proc Natl Acad Sci U S A. 2017 Mar 21. pii: 201701640. doi:, 10.1073/pnas.1701640114. PMID:28325875
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (5m0w.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 5M0W
  • CSU: Contacts of Structural Units for 5M0W
  • Structure Factors (1187 Kb)
  • Retrieve 5M0W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M0W from S2C, [Save to disk]
  • Re-refined 5m0w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5M0W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5M0W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m0w] [5m0w_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5M0W
  • Community annotation for 5M0W at PDBWiki (http://pdbwiki.org)

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