5M11 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, CAC, CL, GOL, PEG, PG4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional probing of PorZ, an essential bacterial surface component of the type-IX secretion system of human oral-microbiomic Porphyromonas gingivalis., Lasica AM, Goulas T, Mizgalska D, Zhou X, de Diego I, Ksiazek M, Madej M, Guo Y, Guevara T, Nowak M, Potempa B, Goel A, Sztukowska M, Prabhakar AT, Bzowska M, Widziolek M, Thogersen IB, Enghild JJ, Simonian M, Kulczyk AW, Nguyen KA, Potempa J, Gomis-Ruth FX, Sci Rep. 2016 Nov 24;6:37708. doi: 10.1038/srep37708. PMID:27883039
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (250 Kb) [Save to disk]
  • Biological Unit Coordinates (5m11.pdb1.gz) 243 Kb
  • LPC: Ligand-Protein Contacts for 5M11
  • CSU: Contacts of Structural Units for 5M11
  • Structure Factors (183 Kb)
  • Retrieve 5M11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M11 from S2C, [Save to disk]
  • Re-refined 5m11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5M11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m11] [5m11_A]
  • SWISS-PROT database:

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