5M3H	Transferase	date	Oct 14, 2016
title	Bat Influenza Ah17n10 Polymerase Bound To Four Heptad Repea Serine 5 Phosphorylated Pol II Ctd
authors	M.Lukarska, A.Pflug, S.Cusack
compound		source
Molecule: Polymerase Acidic Protein Chain: A Engineered: Yes Other_details: N-Terminal Linker C-Terminal Linker And Tev		Organism_scientific: Influenza A Virus Organism_taxid: 11320 Gene: Pa Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111
Molecule: Rna-Directed Rna Polymerase Catalytic Subunit Chain: B Ec: 2.7.7.48 Engineered: Yes Other_details: N-Terminal Linker C-Terminal Linker And Tev		Organism_scientific: Influenza A Virus Organism_taxid: 11320 Gene: Pb1 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111
Molecule: Polymerase Basic Protein 2 Chain: C Engineered: Yes Other_details: N-Terminal Linker, C-Terminal Linker And Str Tev Site;		Organism_scientific: Influenza A Virus Organism_taxid: 11320 Gene: Pb2 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111
Molecule: Rna (5'-R(Upapupapcpcpupcpupgpcpupu) Chain: R Engineered: Yes Other_details: 3 Prime End Of Influenza Vrna Promoter		Synthetic: Yes Organism_scientific: Influenza A Virus Organism_taxid: 11320
Molecule: Rna 5'-Paguaguaacaagaggg Chain: V Engineered: Yes Other_details: 5 Prime End Of Influenza Vrna Promoter		Synthetic: Yes Organism_scientific: Influenza A Virus Organism_taxid: 11320
Molecule: Tyr-Ser-Pro-Thr-Sep-Pro Chain: X, Y Engineered: Yes Other_details: Synthetic Peptide Corresponding To 4 Heptad Serine 5 Phosphorylated Pol II Ctd		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.210 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 269.490 147.520 88.480 90.00 97.22 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	PO4, SEP, ZN	enzyme	Transferase E.C.2.7.7.48 BRENDA
Gene Ontology	Chain Function Process Component A B RNA-directed 5'-3' RNA polym... C X, Y
Primary reference	Structural basis of an essential interaction between influenza polymerase and Pol II CTD., Lukarska M, Fournier G, Pflug A, Resa-Infante P, Reich S, Naffakh N, Cusack S, Nature. 2017 Jan 5;541(7635):117-121. doi: 10.1038/nature20594. Epub 2016 Dec 21. PMID:28002402

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (380 Kb) [Save to disk] Biological Unit Coordinates (5m3h.pdb1.gz) 372 Kb LPC: Ligand-Protein Contacts for 5M3H CSU: Contacts of Structural Units for 5M3H Structure Factors (2228 Kb) Retrieve 5M3H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5M3H from S2C, [Save to disk] Re-refined 5m3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5M3H in 3D

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Visual 3D analysis of 5M3H

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5m3h_C] [5m3h_R] [5m3h_V] [5m3h_B] [5m3h] [5m3h_X] [5m3h_Y] [5m3h_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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