5M4B Isomerase date Oct 18, 2016
title Alpha-Amino Epsilon-Caprolactam Racemase D210a Mutant In Com Plp And Geminal Diamine Intermediate
authors A.Frese, P.W.Sutton, J.P.Turkenburg, G.Grogan
compound source
Molecule: Aminotransferase Class-III
Chain: A
Synonym: Alpha-Amino Epsilon-Caprolactam Racemase
Ec: 5.1.1.15
Engineered: Yes
Mutation: Yes
 Organism_scientific: Rhizobacter
Organism_taxid: 212743
Gene: Rhsp_08934
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.140 R_Free 0.168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.210 79.111 58.971 90.00 112.82 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand 7F7, EDO enzyme Isomerase E.C.5.1.1.15 BRENDA
Gene RHSP
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (5m4b.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 5M4B
  • CSU: Contacts of Structural Units for 5M4B
  • Structure Factors (3801 Kb)
  • Retrieve 5M4B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M4B from S2C, [Save to disk]
  • Re-refined 5m4b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5M4B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M4B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m4b_A] [5m4b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5M4B
  • Community annotation for 5M4B at PDBWiki (http://pdbwiki.org)

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