5M4P	Transferase	date	Oct 18, 2016
title	Application Of Off-Rate Screening In The Identification Of N Isoform Inhibitors Of Pyruvate Dehydrogenase Kinase
authors	L.M.Baker, P.Brough, A.Surgenor
compound		source
Molecule: [Pyruvate Dehydrogenase (Acetyl-Transferring)] Ki Isozyme 2, Mitochondrial; Chain: A Synonym: Pyruvate Dehydrogenase Kinase Isoform 2,Pdkii Ec: 2.7.11.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdk2, Pdhk2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
symmetry	Space Group: P 64	R_factor 0.200 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.442 109.442 84.515 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	7FE, CL, TF3	enzyme	Transferase E.C.2.7.11.2 BRENDA
Gene Ontology	Chain Function Process Component A protein kinase activity protein serine/threonine kin... pyruvate dehydrogenase (acet...
Primary reference	Application of Off-Rate Screening in the Identification of Novel Pan-Isoform Inhibitors of Pyruvate Dehydrogenase Kinase., Brough PA, Baker L, Bedford S, Brown K, Chavda S, Chell V, D'Alessandro J, Davies NG, Davis B, Le Strat L, Macias AT, Maddox D, Mahon PC, Massey AJ, Matassova N, McKenna S, Moore JD, Murray JB, Northfield CJ, Parry C, Parsons R, Roughley SD, Shaw T, Simmonite H, Stokes S, Surgenor A, Stefaniak E, Robertson A, Wang Y, Webb P, Whitehead N, Wood M, J Med Chem. 2017 Feb 15. doi: 10.1021/acs.jmedchem.6b01478. PMID:28199108

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk] Biological Unit Coordinates (5m4p.pdb1.gz) 60 Kb LPC: Ligand-Protein Contacts for 5M4P CSU: Contacts of Structural Units for 5M4P Structure Factors (774 Kb) Retrieve 5M4P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5M4P from S2C, [Save to disk] Re-refined 5m4p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5m4p_A] [5m4p] SWISS-PROT database: Domain organization of by SWISSPFAM

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