5M6C Calcium Binding Protein date Oct 24, 2016
title Crystal Structure Of T71n Mutant Of Human Hippocalcin
authors N.Helassa, S.V.Antonyuk, L.Y.Lian, L.P.Haynes, R.D.Burgoyne
compound source
Molecule: Neuron-Specific Calcium-Binding Protein Hippocalc
Chain: A
Synonym: Calcium-Binding Protein Bdr-2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hpca, Bdr2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pe-Sumo

Molecule: Neuron-Specific Calcium-Binding Protein Hippocalc
Chain: E
Synonym: Calcium-Binding Protein Bdr-2
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hpca, Bdr2
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_plasmid: Pe-Sumo
symmetry Space Group: P 61
R_factor 0.219 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.160 51.160 284.061 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


Primary referenceBiophysical and functional characterization of hippocalcin mutants responsible for human dystonia., Helassa N, Antonyuk SV, Lian LY, Haynes LP, Burgoyne RD, Hum Mol Genet. 2017 Apr 7. doi: 10.1093/hmg/ddx133. PMID:28398555
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5m6c.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (5m6c.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 5M6C
  • CSU: Contacts of Structural Units for 5M6C
  • Structure Factors (515 Kb)
  • Retrieve 5M6C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M6C from S2C, [Save to disk]
  • Re-refined 5m6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5M6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5M6C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m6c] [5m6c_E] [5m6c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5M6C
  • Community annotation for 5M6C at PDBWiki (http://pdbwiki.org)

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