5M7X Translation date Oct 28, 2016
title Translation Initiation Factor 4e In Complex With (Rp)-M2(7,2 Mrna 5' Cap Analog (Beta-Se-Arca D1)
authors M.Warminski, E.Nowak, J.Kowalska, J.Jemielity, M.Nowotny
compound source
Molecule: Eukaryotic Translation Initiation Factor 4e
Chain: A, B, C, D
Synonym: Mrna Cap-Binding Protein,Eif-4f 25 Kda Subunit
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Eif4e
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.192 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.110 38.160 147.070 88.55 95.32 103.33
method X-Ray Diffractionresolution 1.68 Å
ligand GOL, RSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (5m7x.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (5m7x.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (5m7x.pdb3.gz) 53 Kb
  • Biological Unit Coordinates (5m7x.pdb4.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 5M7X
  • CSU: Contacts of Structural Units for 5M7X
  • Structure Factors (1344 Kb)
  • Retrieve 5M7X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M7X from S2C, [Save to disk]
    • View 5M7X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M7X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m7x_B] [5m7x_C] [5m7x_D] [5m7x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5M7X
  • Community annotation for 5M7X at PDBWiki (http://pdbwiki.org)

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