5MB4 Sugar Binding Protein date Nov 07, 2016
title Crystal Structure Of The Psathyrella Asperospora Lectin Pal With Glcnac
authors J.Ribeiro, A.Varrot
compound source
Molecule: Glcnac Specific Lectin
Chain: A
 Organism_scientific: Psathyrella
Organism_taxid: 71729
Variant: Asperospora
symmetry Space Group: H 3 2
R_factor 0.169 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.550 120.550 198.950 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand MLI, NA, NAG, NDG enzyme
Primary referenceBiophysical characterization and structural determination of the potent cytotoxic Psathyrella asperospora lectin., Ribeiro JP, Ali Abol Hassan M, Rouf R, Tiralongo E, May TW, Day CJ, Imberty A, Tiralongo J, Varrot A, Proteins. 2017 Feb 7. doi: 10.1002/prot.25265. PMID:28168856
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (5mb4.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 5MB4
  • CSU: Contacts of Structural Units for 5MB4
  • Structure Factors (1661 Kb)
  • Retrieve 5MB4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MB4 from S2C, [Save to disk]
  • Re-refined 5mb4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5MB4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MB4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mb4] [5mb4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MB4
  • Community annotation for 5MB4 at PDBWiki (http://pdbwiki.org)

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