5MCW Transcription date Nov 10, 2016
title New Insights Into The Role Of Dna Shape On Its Recognition B Proteins (Complex P53dbd-Lwc2)
authors D.Golovenko, H.Rozenberg, Z.Shakked
compound source
Molecule: Cellular Tumor Antigen P53
Chain: A, B
Fragment: P53 Dna Binding Domain
Synonym: Antigen Ny-Co-13,Phosphoprotein P53,Tumor Suppress
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tp53, P53
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet27-B

Molecule: Dna
Chain: C
Fragment: Dna
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Synthesised By Idt
symmetry Space Group: P 21 21 2
R_factor 0.200 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.403 68.408 69.680 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 5CM, FOR, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNew Insights into the Role of DNA Shape on Its Recognition by p53 Proteins., Golovenko D, Brauning B, Vyas P, Haran TE, Rozenberg H, Shakked Z, Structure. 2018 Sep 4;26(9):1237-1250.e6. doi: 10.1016/j.str.2018.06.006. Epub, 2018 Jul 26. PMID:30057026
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (5mcw.pdb1.gz) 308 Kb
  • LPC: Ligand-Protein Contacts for 5MCW
  • CSU: Contacts of Structural Units for 5MCW
  • Structure Factors (1194 Kb)
  • Retrieve 5MCW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MCW from S2C, [Save to disk]
  • View 5MCW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MCW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mcw_C] [5mcw_A] [5mcw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MCW
  • Community annotation for 5MCW at PDBWiki (http://pdbwiki.org)

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