5MDB		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component G, D, E, F, C, A, W, B b, f, I, a, H, J
Primary reference	The structure and flexibility of conical HIV-1 capsids determined within intact virions., Mattei S, Glass B, Hagen WJ, Krausslich HG, Briggs JA, Science. 2016 Dec 16;354(6318):1434-1437. PMID:27980210

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (5mdb.pdb1.gz) 99 Kb CSU: Contacts of Structural Units for 5MDB Retrieve 5MDB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MDB from S2C, [Save to disk]

View 5MDB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mdb] [5mdb_A] [5mdb_B] [5mdb_C] [5mdb_D] [5mdb_E] [5mdb_F] [5mdb_G] [5mdb_H] [5mdb_I] [5mdb_J] [5mdb_W] [5mdb_a] [5mdb_b] [5mdb_f] SWISS-PROT database:

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